Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
HADHAP40939 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.13■□□□□ 0.01
HADHAP40939 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.13■□□□□ 0.01
HADHAP40939 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.13■□□□□ 0.01
HADHAP40939 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HADHAP40939 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HADHAP40939 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.12■□□□□ 0.01
HADHAP40939 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
HADHAP40939 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.12■□□□□ 0.01
HADHAP40939 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 MIR5189-201ENST00000577370 114 ntBASIC15.12■□□□□ 0.01
HADHAP40939 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 AC015936.2-201ENST00000593177 259 ntBASIC15.12■□□□□ 0.01
HADHAP40939 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 AC104581.4-201ENST00000623126 3052 ntBASIC15.12■□□□□ 0.01
HADHAP40939 AC134312.5-201ENST00000568031 1313 ntBASIC15.12■□□□□ 0.01
HADHAP40939 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.12■□□□□ 0.01
HADHAP40939 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HADHAP40939 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.12■□□□□ 0.01
HADHAP40939 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.11■□□□□ 0.01
HADHAP40939 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HADHAP40939 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.11■□□□□ 0.01
HADHAP40939 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HADHAP40939 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.11■□□□□ 0.01
HADHAP40939 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.11■□□□□ 0.01
HADHAP40939 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HADHAP40939 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.11■□□□□ 0.01
HADHAP40939 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HADHAP40939 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms