Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL18A1P39060 SARS-202ENST00000369923 1882 ntTSL 5 BASIC18.97■□□□□ 0.63
COL18A1P39060 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
COL18A1P39060 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 MYADML-201ENST00000474610 2147 ntBASIC18.96■□□□□ 0.63
COL18A1P39060 AC083801.1-201ENST00000491689 358 ntBASIC18.96■□□□□ 0.63
COL18A1P39060 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC18.96■□□□□ 0.63
COL18A1P39060 AC145285.5-201ENST00000562217 361 ntBASIC18.96■□□□□ 0.63
COL18A1P39060 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.96■□□□□ 0.63
COL18A1P39060 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC18.96■□□□□ 0.63
COL18A1P39060 AP001527.2-201ENST00000614441 631 ntBASIC18.96■□□□□ 0.63
COL18A1P39060 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL18A1P39060 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL18A1P39060 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.96■□□□□ 0.63
COL18A1P39060 DLK1-205ENST00000556051 469 ntTSL 2 BASIC18.96■□□□□ 0.63
COL18A1P39060 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL18A1P39060 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.62
COL18A1P39060 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.62
COL18A1P39060 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
COL18A1P39060 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.95■□□□□ 0.62
COL18A1P39060 AMT-256ENST00000638063 1783 ntTSL 5 BASIC18.95■□□□□ 0.62
COL18A1P39060 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.95■□□□□ 0.62
COL18A1P39060 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
COL18A1P39060 MIR1301-201ENST00000408518 82 ntBASIC18.95■□□□□ 0.62
COL18A1P39060 AC073210.1-201ENST00000414799 232 ntBASIC18.95■□□□□ 0.62
COL18A1P39060 AL929302.1-201ENST00000426556 871 ntBASIC18.95■□□□□ 0.62
COL18A1P39060 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC18.95■□□□□ 0.62
COL18A1P39060 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC18.95■□□□□ 0.62
COL18A1P39060 GAS7-216ENST00000583882 553 ntTSL 5 BASIC18.95■□□□□ 0.62
COL18A1P39060 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL18A1P39060 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL18A1P39060 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.94■□□□□ 0.62
COL18A1P39060 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL18A1P39060 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC18.94■□□□□ 0.62
COL18A1P39060 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC18.94■□□□□ 0.62
COL18A1P39060 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC18.94■□□□□ 0.62
COL18A1P39060 AL136982.5-201ENST00000605222 294 ntBASIC18.94■□□□□ 0.62
COL18A1P39060 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC18.94■□□□□ 0.62
COL18A1P39060 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.94■□□□□ 0.62
COL18A1P39060 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 AL365181.1-201ENST00000564032 1828 ntBASIC18.94■□□□□ 0.62
COL18A1P39060 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL18A1P39060 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL18A1P39060 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.94■□□□□ 0.62
COL18A1P39060 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms