Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR566-201ENST00000385187 94 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC18.12■□□□□ 0.49
COL5A3P25940 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC18.12■□□□□ 0.49
COL5A3P25940 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL5A3P25940 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 AC022080.1-201ENST00000366255 781 ntBASIC18.11■□□□□ 0.49
COL5A3P25940 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 AL929302.1-201ENST00000426556 871 ntBASIC18.11■□□□□ 0.49
COL5A3P25940 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC18.11■□□□□ 0.49
COL5A3P25940 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL5A3P25940 PFN2-212ENST00000490975 858 ntTSL 4 BASIC18.11■□□□□ 0.49
COL5A3P25940 AC083801.1-201ENST00000491689 358 ntBASIC18.11■□□□□ 0.49
COL5A3P25940 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC18.11■□□□□ 0.49
COL5A3P25940 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC18.11■□□□□ 0.49
COL5A3P25940 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 LINC00115-201ENST00000473798 1317 ntBASIC18.11■□□□□ 0.49
COL5A3P25940 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL5A3P25940 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A3P25940 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL5A3P25940 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC18.1■□□□□ 0.49
COL5A3P25940 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC18.1■□□□□ 0.49
COL5A3P25940 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC18.1■□□□□ 0.49
COL5A3P25940 FAM86KP-201ENST00000509817 987 ntBASIC18.1■□□□□ 0.49
COL5A3P25940 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC18.1■□□□□ 0.49
COL5A3P25940 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC18.1■□□□□ 0.49
COL5A3P25940 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.1■□□□□ 0.49
COL5A3P25940 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 SARS-202ENST00000369923 1882 ntTSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A3P25940 MYADML-201ENST00000474610 2147 ntBASIC18.1■□□□□ 0.49
COL5A3P25940 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A3P25940 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL5A3P25940 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A3P25940 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 RPL3P5-201ENST00000441645 1232 ntBASIC18.09■□□□□ 0.49
COL5A3P25940 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 SLC25A15P3-201ENST00000505530 290 ntBASIC18.09■□□□□ 0.49
COL5A3P25940 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 DLK1-205ENST00000556051 469 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 AC023968.2-201ENST00000560593 1049 ntBASIC18.09■□□□□ 0.49
COL5A3P25940 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 GAS7-216ENST00000583882 553 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms