Protein–RNA interactions for Protein: P23510

TNFSF4, Tumor necrosis factor ligand superfamily member 4, humanhuman

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF4P23510 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.82□□□□□ -0.36
TNFSF4P23510 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
TNFSF4P23510 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
TNFSF4P23510 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
TNFSF4P23510 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
TNFSF4P23510 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 MIR658-201ENST00000385210 100 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
TNFSF4P23510 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 CNN2P8-201ENST00000421872 913 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 FAM197Y7-201ENST00000432892 766 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12.81□□□□□ -0.36
TNFSF4P23510 KRT223P-202ENST00000449164 1292 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 FO681548.1-201ENST00000455617 1132 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.81□□□□□ -0.36
TNFSF4P23510 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 PUDP-206ENST00000540122 825 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.81□□□□□ -0.36
TNFSF4P23510 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.81□□□□□ -0.36
TNFSF4P23510 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC12.81□□□□□ -0.36
TNFSF4P23510 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.81□□□□□ -0.36
TNFSF4P23510 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC12.81□□□□□ -0.36
TNFSF4P23510 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.81□□□□□ -0.36
TNFSF4P23510 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.81□□□□□ -0.36
TNFSF4P23510 AGAP7P-201ENST00000582299 2062 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 AGAP14-201ENST00000624701 2060 ntBASIC12.81□□□□□ -0.36
TNFSF4P23510 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
TNFSF4P23510 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.8□□□□□ -0.36
TNFSF4P23510 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.8□□□□□ -0.36
TNFSF4P23510 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
TNFSF4P23510 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.8□□□□□ -0.36
TNFSF4P23510 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.8□□□□□ -0.36
TNFSF4P23510 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.8□□□□□ -0.36
TNFSF4P23510 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.8□□□□□ -0.36
TNFSF4P23510 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
TNFSF4P23510 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
TNFSF4P23510 AC079776.1-201ENST00000401540 1152 ntBASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms