Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.76■□□□□ 0.11
RTN3O95197 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.76■□□□□ 0.11
RTN3O95197 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RTN3O95197 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RTN3O95197 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.76■□□□□ 0.11
RTN3O95197 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RTN3O95197 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RTN3O95197 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RTN3O95197 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.76■□□□□ 0.11
RTN3O95197 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RTN3O95197 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RTN3O95197 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 CICP24-201ENST00000605464 2705 ntBASIC15.75■□□□□ 0.11
RTN3O95197 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.75■□□□□ 0.11
RTN3O95197 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.75■□□□□ 0.11
RTN3O95197 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RTN3O95197 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
RTN3O95197 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RTN3O95197 RN7SKP175-201ENST00000408472 289 ntBASIC15.75■□□□□ 0.11
RTN3O95197 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.75■□□□□ 0.11
RTN3O95197 AC007969.1-201ENST00000433675 447 ntBASIC15.75■□□□□ 0.11
RTN3O95197 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RTN3O95197 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 CHMP1AP1-201ENST00000445563 662 ntBASIC15.75■□□□□ 0.11
RTN3O95197 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.75■□□□□ 0.11
RTN3O95197 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 AC108725.1-201ENST00000495472 409 ntBASIC15.75■□□□□ 0.11
RTN3O95197 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.75■□□□□ 0.11
RTN3O95197 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.75■□□□□ 0.11
RTN3O95197 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.75■□□□□ 0.11
RTN3O95197 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.75■□□□□ 0.11
RTN3O95197 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RTN3O95197 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RTN3O95197 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.75■□□□□ 0.11
RTN3O95197 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
RTN3O95197 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 AL138725.1-201ENST00000407347 1314 ntBASIC15.74■□□□□ 0.11
RTN3O95197 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.74■□□□□ 0.11
RTN3O95197 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.74■□□□□ 0.11
RTN3O95197 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.74■□□□□ 0.11
RTN3O95197 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 RPSAP36-202ENST00000494591 1261 ntBASIC15.74■□□□□ 0.11
RTN3O95197 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.74■□□□□ 0.11
RTN3O95197 MIR4525-201ENST00000580000 75 ntBASIC15.74■□□□□ 0.11
RTN3O95197 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.74■□□□□ 0.11
RTN3O95197 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RTN3O95197 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.74■□□□□ 0.11
RTN3O95197 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
RTN3O95197 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
RTN3O95197 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.73■□□□□ 0.11
RTN3O95197 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RTN3O95197 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms