Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 BTBD6P1-201ENST00000412176 1267 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.77■□□□□ 0.28
CHMP2AO43633 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 CHMP1AP1-201ENST00000445563 662 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP2AO43633 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.77■□□□□ 0.28
CHMP2AO43633 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC108725.1-201ENST00000495472 409 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP2AO43633 AL358472.3-201ENST00000608147 415 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 AL136301.1-201ENST00000615830 422 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CHMP2AO43633 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CHMP2AO43633 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CHMP2AO43633 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP2AO43633 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP2AO43633 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP2AO43633 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.77■□□□□ 0.27
CHMP2AO43633 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.77■□□□□ 0.27
CHMP2AO43633 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP2AO43633 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CHMP2AO43633 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.76■□□□□ 0.27
CHMP2AO43633 AC079178.1-201ENST00000420915 656 ntBASIC16.76■□□□□ 0.27
CHMP2AO43633 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 TLE1P1-201ENST00000422965 589 ntBASIC16.76■□□□□ 0.27
CHMP2AO43633 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.76■□□□□ 0.27
CHMP2AO43633 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CHMP2AO43633 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP2AO43633 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 AL096828.3-201ENST00000615354 462 ntBASIC16.76■□□□□ 0.27
CHMP2AO43633 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP2AO43633 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP2AO43633 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP2AO43633 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP2AO43633 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 INTS4P1-203ENST00000641008 3683 ntBASIC16.75■□□□□ 0.27
CHMP2AO43633 AC018442.1-201ENST00000421439 2061 ntBASIC16.75■□□□□ 0.27
CHMP2AO43633 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP2AO43633 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AC100850.1-201ENST00000506768 649 ntBASIC16.75■□□□□ 0.27
CHMP2AO43633 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.75■□□□□ 0.27
CHMP2AO43633 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.75■□□□□ 0.27
CHMP2AO43633 AC005695.3-201ENST00000614522 232 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms