Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.77□□□□□ -0.37
SDCBPO00560 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 CICP17-201ENST00000418553 2377 ntBASIC12.77□□□□□ -0.37
SDCBPO00560 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 AL359881.3-201ENST00000602640 1721 ntBASIC12.76□□□□□ -0.37
SDCBPO00560 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 AC055876.3-201ENST00000431496 288 ntBASIC12.76□□□□□ -0.37
SDCBPO00560 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.76□□□□□ -0.37
SDCBPO00560 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.76□□□□□ -0.37
SDCBPO00560 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.76□□□□□ -0.37
SDCBPO00560 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.76□□□□□ -0.37
SDCBPO00560 AC138649.4-201ENST00000612222 287 ntBASIC12.76□□□□□ -0.37
SDCBPO00560 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.76□□□□□ -0.37
SDCBPO00560 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
SDCBPO00560 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.76□□□□□ -0.37
SDCBPO00560 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 BTBD7P1-201ENST00000447253 1453 ntBASIC12.76□□□□□ -0.37
SDCBPO00560 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.76□□□□□ -0.37
SDCBPO00560 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
SDCBPO00560 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SDCBPO00560 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SDCBPO00560 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
SDCBPO00560 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.75□□□□□ -0.37
SDCBPO00560 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 TSSK5P-201ENST00000423978 907 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 AC114501.2-201ENST00000439631 535 ntBASIC12.75□□□□□ -0.37
SDCBPO00560 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SDCBPO00560 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms