Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA11Q9Y5H2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA11Q9Y5H2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.14■■□□□ 1.14
PCDHGA11Q9Y5H2 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.14■■□□□ 1.14
PCDHGA11Q9Y5H2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA11Q9Y5H2 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHGA11Q9Y5H2 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHGA11Q9Y5H2 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 YBX1P4-201ENST00000392794 808 ntBASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 MIR4281-201ENST00000580852 62 ntBASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 AC079834.2-201ENST00000609776 1949 ntBASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PCDHGA11Q9Y5H2 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 AC103834.1-201ENST00000520383 144 ntBASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHGA11Q9Y5H2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA11Q9Y5H2 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA11Q9Y5H2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHGA11Q9Y5H2 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHGA11Q9Y5H2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 AC131274.2-201ENST00000580697 1507 ntBASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA11Q9Y5H2 KRT8P33-201ENST00000508125 1423 ntBASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 AF131216.4-201ENST00000638924 1588 ntBASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA11Q9Y5H2 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
PCDHGA11Q9Y5H2 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA11Q9Y5H2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms