Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 PVT1_1.1-201ENST00000615125 194 ntBASIC20.4■□□□□ 0.86
VSX1Q9NZR4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VSX1Q9NZR4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.39■□□□□ 0.86
VSX1Q9NZR4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VSX1Q9NZR4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VSX1Q9NZR4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VSX1Q9NZR4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.39■□□□□ 0.86
VSX1Q9NZR4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VSX1Q9NZR4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.39■□□□□ 0.85
VSX1Q9NZR4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VSX1Q9NZR4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VSX1Q9NZR4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VSX1Q9NZR4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 KRT18P24-201ENST00000344739 1156 ntBASIC20.38■□□□□ 0.85
VSX1Q9NZR4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VSX1Q9NZR4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VSX1Q9NZR4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 AC010980.1-201ENST00000587192 1142 ntBASIC20.36■□□□□ 0.85
VSX1Q9NZR4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VSX1Q9NZR4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.35■□□□□ 0.85
VSX1Q9NZR4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 THA1P-201ENST00000590384 1145 ntBASIC20.34■□□□□ 0.85
VSX1Q9NZR4 AC012354.3-201ENST00000623734 483 ntBASIC20.34■□□□□ 0.85
VSX1Q9NZR4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VSX1Q9NZR4 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.34■□□□□ 0.85
VSX1Q9NZR4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.33■□□□□ 0.85
VSX1Q9NZR4 MIR4281-201ENST00000580852 62 ntBASIC20.33■□□□□ 0.85
VSX1Q9NZR4 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VSX1Q9NZR4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VSX1Q9NZR4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 AF131216.4-201ENST00000638924 1588 ntBASIC20.32■□□□□ 0.84
VSX1Q9NZR4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 ALDH1A3-203ENST00000557963 1670 ntBASIC20.32■□□□□ 0.84
VSX1Q9NZR4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VSX1Q9NZR4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.31■□□□□ 0.84
VSX1Q9NZR4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms