Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 MIR6724-4-201ENST00000617390 92 ntBASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 MIR6724-3-201ENST00000622482 92 ntBASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
C9orf40Q8IXQ3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.23■□□□□ 0.99
C9orf40Q8IXQ3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
C9orf40Q8IXQ3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
C9orf40Q8IXQ3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
C9orf40Q8IXQ3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
C9orf40Q8IXQ3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
C9orf40Q8IXQ3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.2■□□□□ 0.99
C9orf40Q8IXQ3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 AC131212.1-201ENST00000613771 668 ntBASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
C9orf40Q8IXQ3 AC004812.2-201ENST00000611079 2094 ntBASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.19■□□□□ 0.98
C9orf40Q8IXQ3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 ALDH1A3-203ENST00000557963 1670 ntBASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 AL117332.1-201ENST00000622628 974 ntBASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.18■□□□□ 0.98
C9orf40Q8IXQ3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 AC005703.6-201ENST00000623265 1329 ntBASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
C9orf40Q8IXQ3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.16■□□□□ 0.98
C9orf40Q8IXQ3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C9orf40Q8IXQ3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
C9orf40Q8IXQ3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.14■□□□□ 0.98
C9orf40Q8IXQ3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 MIR3621-201ENST00000580529 85 ntBASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.14■□□□□ 0.97
C9orf40Q8IXQ3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
C9orf40Q8IXQ3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
C9orf40Q8IXQ3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
C9orf40Q8IXQ3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms