Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28AQ8IWP9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.04■□□□□ 0.64
CCDC28AQ8IWP9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28AQ8IWP9 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC28AQ8IWP9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 AC135983.2-203ENST00000454486 1613 ntBASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28AQ8IWP9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CCDC28AQ8IWP9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC28AQ8IWP9 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.02■□□□□ 0.63
CCDC28AQ8IWP9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 SUZ12P1-203ENST00000578195 985 ntBASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28AQ8IWP9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 AC005559.1-201ENST00000589661 871 ntBASIC19■□□□□ 0.63
CCDC28AQ8IWP9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28AQ8IWP9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC28AQ8IWP9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CCDC28AQ8IWP9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 AC004812.2-201ENST00000611079 2094 ntBASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28AQ8IWP9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC28AQ8IWP9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms