Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.65■■□□□ 1.7
CCDC60Q8IWA6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC60Q8IWA6 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC60Q8IWA6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.64■■□□□ 1.69
CCDC60Q8IWA6 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC60Q8IWA6 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
CCDC60Q8IWA6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC60Q8IWA6 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.61■■□□□ 1.69
CCDC60Q8IWA6 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.61■■□□□ 1.69
CCDC60Q8IWA6 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC60Q8IWA6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC60Q8IWA6 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 AL161729.1-201ENST00000604104 1402 ntBASIC25.6■■□□□ 1.69
CCDC60Q8IWA6 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC60Q8IWA6 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC60Q8IWA6 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
CCDC60Q8IWA6 AC110285.6-201ENST00000617652 491 ntBASIC25.57■■□□□ 1.68
CCDC60Q8IWA6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
CCDC60Q8IWA6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
CCDC60Q8IWA6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
CCDC60Q8IWA6 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.57■■□□□ 1.68
CCDC60Q8IWA6 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
CCDC60Q8IWA6 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 AC096631.2-201ENST00000436136 790 ntBASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 AL139246.5-201ENST00000606645 996 ntBASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.55■■□□□ 1.68
CCDC60Q8IWA6 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC60Q8IWA6 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC60Q8IWA6 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC60Q8IWA6 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC60Q8IWA6 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
CCDC60Q8IWA6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 MIR638-201ENST00000385237 100 ntBASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 AC019069.1-201ENST00000610008 1333 ntBASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC60Q8IWA6 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 SRD5A1P1-201ENST00000442297 786 ntBASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC60Q8IWA6 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC60Q8IWA6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC60Q8IWA6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms