Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.66■□□□□ 0.74
USF3Q68DE3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.66■□□□□ 0.74
USF3Q68DE3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.66■□□□□ 0.74
USF3Q68DE3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
USF3Q68DE3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF3Q68DE3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF3Q68DE3 AC005703.6-201ENST00000623265 1329 ntBASIC19.65■□□□□ 0.74
USF3Q68DE3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF3Q68DE3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
USF3Q68DE3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USF3Q68DE3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USF3Q68DE3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.64■□□□□ 0.74
USF3Q68DE3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.64■□□□□ 0.74
USF3Q68DE3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
USF3Q68DE3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
USF3Q68DE3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF3Q68DE3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.63■□□□□ 0.73
USF3Q68DE3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USF3Q68DE3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.63■□□□□ 0.73
USF3Q68DE3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.63■□□□□ 0.73
USF3Q68DE3 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.63■□□□□ 0.73
USF3Q68DE3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.63■□□□□ 0.73
USF3Q68DE3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
USF3Q68DE3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF3Q68DE3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
USF3Q68DE3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USF3Q68DE3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
USF3Q68DE3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.62■□□□□ 0.73
USF3Q68DE3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USF3Q68DE3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF3Q68DE3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
USF3Q68DE3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.61■□□□□ 0.73
USF3Q68DE3 AL355001.2-201ENST00000620617 1191 ntBASIC19.61■□□□□ 0.73
USF3Q68DE3 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.61■□□□□ 0.73
USF3Q68DE3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF3Q68DE3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF3Q68DE3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USF3Q68DE3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF3Q68DE3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF3Q68DE3 AL136162.1-201ENST00000607711 1078 ntBASIC19.6■□□□□ 0.73
USF3Q68DE3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USF3Q68DE3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF3Q68DE3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.6■□□□□ 0.73
USF3Q68DE3 SYT6-210ENST00000641643 1587 ntBASIC19.6■□□□□ 0.73
USF3Q68DE3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.6■□□□□ 0.73
USF3Q68DE3 SLC6A10P-202ENST00000431994 2058 ntBASIC19.59■□□□□ 0.73
USF3Q68DE3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.59■□□□□ 0.73
USF3Q68DE3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
USF3Q68DE3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.59■□□□□ 0.73
USF3Q68DE3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
USF3Q68DE3 AP001330.3-201ENST00000520123 633 ntBASIC19.59■□□□□ 0.73
USF3Q68DE3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.59■□□□□ 0.73
USF3Q68DE3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF3Q68DE3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USF3Q68DE3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USF3Q68DE3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USF3Q68DE3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.58■□□□□ 0.73
USF3Q68DE3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USF3Q68DE3 AC004448.1-201ENST00000458332 883 ntBASIC19.58■□□□□ 0.73
USF3Q68DE3 AC105265.2-201ENST00000467189 838 ntBASIC19.58■□□□□ 0.73
USF3Q68DE3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.58■□□□□ 0.73
USF3Q68DE3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.58■□□□□ 0.72
USF3Q68DE3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF3Q68DE3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF3Q68DE3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.57■□□□□ 0.72
USF3Q68DE3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
USF3Q68DE3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.57■□□□□ 0.72
USF3Q68DE3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms