Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL512631.2-201ENST00000604634 923 ntBASIC26.58■■□□□ 1.85
CCDC144BQ3MJ40 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC144BQ3MJ40 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC144BQ3MJ40 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC144BQ3MJ40 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC144BQ3MJ40 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC144BQ3MJ40 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.55■■□□□ 1.84
CCDC144BQ3MJ40 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC144BQ3MJ40 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.55■■□□□ 1.84
CCDC144BQ3MJ40 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.54■■□□□ 1.84
CCDC144BQ3MJ40 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.54■■□□□ 1.84
CCDC144BQ3MJ40 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.54■■□□□ 1.84
CCDC144BQ3MJ40 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 AC005837.3-201ENST00000612163 286 ntBASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CCDC144BQ3MJ40 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CCDC144BQ3MJ40 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC144BQ3MJ40 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC144BQ3MJ40 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CCDC144BQ3MJ40 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.51■■□□□ 1.84
CCDC144BQ3MJ40 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.51■■□□□ 1.83
CCDC144BQ3MJ40 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CCDC144BQ3MJ40 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.5■■□□□ 1.83
CCDC144BQ3MJ40 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
CCDC144BQ3MJ40 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.5■■□□□ 1.83
CCDC144BQ3MJ40 AC090877.2-201ENST00000558441 1738 ntBASIC26.5■■□□□ 1.83
CCDC144BQ3MJ40 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 SNX5-217ENST00000606557 1087 ntBASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC144BQ3MJ40 LINC01124-201ENST00000409786 2117 ntBASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC144BQ3MJ40 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC144BQ3MJ40 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC144BQ3MJ40 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC144BQ3MJ40 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC144BQ3MJ40 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC144BQ3MJ40 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC144BQ3MJ40 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 AC133561.4-201ENST00000566112 224 ntBASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 MIR6722-201ENST00000617286 78 ntBASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
CCDC144BQ3MJ40 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms