Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
RNF4P78317 LINC01124-201ENST00000409786 2117 ntBASIC21.22■□□□□ 0.99
RNF4P78317 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF4P78317 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF4P78317 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF4P78317 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF4P78317 AL117332.1-201ENST00000622628 974 ntBASIC21.22■□□□□ 0.99
RNF4P78317 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.22■□□□□ 0.99
RNF4P78317 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF4P78317 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF4P78317 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.21■□□□□ 0.99
RNF4P78317 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF4P78317 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
RNF4P78317 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF4P78317 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.21■□□□□ 0.99
RNF4P78317 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.21■□□□□ 0.99
RNF4P78317 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF4P78317 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF4P78317 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF4P78317 MIR3621-201ENST00000580529 85 ntBASIC21.2■□□□□ 0.98
RNF4P78317 AL356740.2-201ENST00000601559 647 ntBASIC21.2■□□□□ 0.98
RNF4P78317 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 AC005703.6-201ENST00000623265 1329 ntBASIC21.2■□□□□ 0.98
RNF4P78317 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RNF4P78317 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF4P78317 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF4P78317 AC141586.4-201ENST00000624558 1573 ntBASIC21.19■□□□□ 0.98
RNF4P78317 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF4P78317 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.19■□□□□ 0.98
RNF4P78317 LINC00543-201ENST00000567234 1845 ntBASIC21.19■□□□□ 0.98
RNF4P78317 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RNF4P78317 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RNF4P78317 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNF4P78317 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNF4P78317 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNF4P78317 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF4P78317 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF4P78317 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.18■□□□□ 0.98
RNF4P78317 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF4P78317 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.17■□□□□ 0.98
RNF4P78317 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF4P78317 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.17■□□□□ 0.98
RNF4P78317 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.17■□□□□ 0.98
RNF4P78317 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF4P78317 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF4P78317 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF4P78317 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF4P78317 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF4P78317 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF4P78317 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF4P78317 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF4P78317 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF4P78317 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF4P78317 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF4P78317 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF4P78317 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF4P78317 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.16■□□□□ 0.98
RNF4P78317 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF4P78317 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RNF4P78317 ALDH1A3-203ENST00000557963 1670 ntBASIC21.15■□□□□ 0.98
RNF4P78317 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF4P78317 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.15■□□□□ 0.98
RNF4P78317 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.15■□□□□ 0.98
RNF4P78317 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF4P78317 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF4P78317 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.15■□□□□ 0.98
RNF4P78317 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.15■□□□□ 0.98
RNF4P78317 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF4P78317 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF4P78317 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNF4P78317 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.14■□□□□ 0.97
RNF4P78317 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.14■□□□□ 0.97
RNF4P78317 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.14■□□□□ 0.97
RNF4P78317 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.14■□□□□ 0.97
RNF4P78317 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RNF4P78317 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.14■□□□□ 0.97
RNF4P78317 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF4P78317 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF4P78317 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF4P78317 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF4P78317 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RNF4P78317 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms