Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM3P62310 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
LSM3P62310 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM3P62310 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM3P62310 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
LSM3P62310 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
LSM3P62310 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM3P62310 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LSM3P62310 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM3P62310 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM3P62310 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM3P62310 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
LSM3P62310 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM3P62310 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LSM3P62310 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM3P62310 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LSM3P62310 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM3P62310 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 MIR219A2-201ENST00000608502 1504 ntBASIC20.57■□□□□ 0.88
LSM3P62310 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM3P62310 DUSP8P3-201ENST00000399571 1760 ntBASIC20.57■□□□□ 0.88
LSM3P62310 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM3P62310 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
LSM3P62310 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM3P62310 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM3P62310 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LSM3P62310 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM3P62310 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM3P62310 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LSM3P62310 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.55■□□□□ 0.88
LSM3P62310 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
LSM3P62310 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.55■□□□□ 0.88
LSM3P62310 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM3P62310 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM3P62310 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.54■□□□□ 0.88
LSM3P62310 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LSM3P62310 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LSM3P62310 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.54■□□□□ 0.88
LSM3P62310 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LSM3P62310 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.54■□□□□ 0.88
LSM3P62310 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LSM3P62310 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.54■□□□□ 0.88
LSM3P62310 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM3P62310 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LSM3P62310 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.53■□□□□ 0.88
LSM3P62310 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.53■□□□□ 0.88
LSM3P62310 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM3P62310 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.52■□□□□ 0.88
LSM3P62310 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM3P62310 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
LSM3P62310 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM3P62310 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM3P62310 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM3P62310 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM3P62310 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms