Protein–RNA interactions for Protein: P22736

NR4A1, Nuclear receptor subfamily 4 group A member 1, humanhuman

Predictions only

Length 598 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1P22736 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 KRT18P60-201ENST00000312876 1297 ntBASIC21.04■□□□□ 0.96
NR4A1P22736 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.04■□□□□ 0.96
NR4A1P22736 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
NR4A1P22736 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NR4A1P22736 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.04■□□□□ 0.96
NR4A1P22736 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
NR4A1P22736 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.03■□□□□ 0.96
NR4A1P22736 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR4A1P22736 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR4A1P22736 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NR4A1P22736 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
NR4A1P22736 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
NR4A1P22736 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.02■□□□□ 0.96
NR4A1P22736 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
NR4A1P22736 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.02■□□□□ 0.96
NR4A1P22736 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.02■□□□□ 0.96
NR4A1P22736 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
NR4A1P22736 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NR4A1P22736 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.95
NR4A1P22736 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR4A1P22736 AC007375.3-201ENST00000600936 2314 ntBASIC21.01■□□□□ 0.95
NR4A1P22736 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR4A1P22736 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NR4A1P22736 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.01■□□□□ 0.95
NR4A1P22736 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR4A1P22736 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR4A1P22736 AL592293.1-201ENST00000502889 1188 ntBASIC21.01■□□□□ 0.95
NR4A1P22736 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NR4A1P22736 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NR4A1P22736 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.01■□□□□ 0.95
NR4A1P22736 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NR4A1P22736 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NR4A1P22736 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21■□□□□ 0.95
NR4A1P22736 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21■□□□□ 0.95
NR4A1P22736 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21■□□□□ 0.95
NR4A1P22736 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21■□□□□ 0.95
NR4A1P22736 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NR4A1P22736 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.99■□□□□ 0.95
NR4A1P22736 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NR4A1P22736 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.99■□□□□ 0.95
NR4A1P22736 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.99■□□□□ 0.95
NR4A1P22736 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NR4A1P22736 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NR4A1P22736 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NR4A1P22736 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.99■□□□□ 0.95
NR4A1P22736 AC012354.3-201ENST00000623734 483 ntBASIC20.99■□□□□ 0.95
NR4A1P22736 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NR4A1P22736 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.99■□□□□ 0.95
NR4A1P22736 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NR4A1P22736 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NR4A1P22736 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.98■□□□□ 0.95
NR4A1P22736 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NR4A1P22736 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.98■□□□□ 0.95
NR4A1P22736 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NR4A1P22736 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.98■□□□□ 0.95
NR4A1P22736 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.98■□□□□ 0.95
NR4A1P22736 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
NR4A1P22736 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NR4A1P22736 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.98■□□□□ 0.95
NR4A1P22736 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NR4A1P22736 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NR4A1P22736 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 C1orf229-201ENST00000623686 2258 ntBASIC20.97■□□□□ 0.95
NR4A1P22736 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.97■□□□□ 0.95
NR4A1P22736 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NR4A1P22736 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NR4A1P22736 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
NR4A1P22736 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.96■□□□□ 0.95
NR4A1P22736 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.96■□□□□ 0.95
NR4A1P22736 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NR4A1P22736 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
NR4A1P22736 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms