Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LMX1BO60663 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1BO60663 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.09■□□□□ 0.81
LMX1BO60663 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.09■□□□□ 0.81
LMX1BO60663 RPS2P7-201ENST00000447334 885 ntBASIC20.09■□□□□ 0.81
LMX1BO60663 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LMX1BO60663 C9orf163-202ENST00000624034 2573 ntBASIC20.09■□□□□ 0.81
LMX1BO60663 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LMX1BO60663 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.08■□□□□ 0.81
LMX1BO60663 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.08■□□□□ 0.81
LMX1BO60663 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.08■□□□□ 0.81
LMX1BO60663 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LMX1BO60663 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LMX1BO60663 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LMX1BO60663 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.07■□□□□ 0.8
LMX1BO60663 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.07■□□□□ 0.8
LMX1BO60663 AC087393.1-201ENST00000582896 145 ntBASIC20.07■□□□□ 0.8
LMX1BO60663 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.07■□□□□ 0.8
LMX1BO60663 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LMX1BO60663 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1BO60663 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
LMX1BO60663 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.06■□□□□ 0.8
LMX1BO60663 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.06■□□□□ 0.8
LMX1BO60663 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.06■□□□□ 0.8
LMX1BO60663 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1BO60663 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1BO60663 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1BO60663 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LMX1BO60663 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1BO60663 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1BO60663 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.05■□□□□ 0.8
LMX1BO60663 Z92544.1-202ENST00000571933 1220 ntBASIC20.05■□□□□ 0.8
LMX1BO60663 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1BO60663 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1BO60663 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1BO60663 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1BO60663 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1BO60663 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1BO60663 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LMX1BO60663 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.04■□□□□ 0.8
LMX1BO60663 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
LMX1BO60663 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.04■□□□□ 0.8
LMX1BO60663 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1BO60663 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LMX1BO60663 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.03■□□□□ 0.8
LMX1BO60663 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
LMX1BO60663 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1BO60663 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1BO60663 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LMX1BO60663 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.02■□□□□ 0.79
LMX1BO60663 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LMX1BO60663 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.01■□□□□ 0.79
LMX1BO60663 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1BO60663 AC008406.3-201ENST00000620001 1374 ntBASIC20.01■□□□□ 0.79
LMX1BO60663 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1BO60663 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LMX1BO60663 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.01■□□□□ 0.79
LMX1BO60663 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1BO60663 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
LMX1BO60663 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 AC090877.2-201ENST00000558441 1738 ntBASIC20■□□□□ 0.79
LMX1BO60663 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20■□□□□ 0.79
LMX1BO60663 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1BO60663 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms