Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49BA6NDI0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 AL033527.3-201ENST00000566366 1196 ntBASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49BA6NDI0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 AC012354.3-201ENST00000623734 483 ntBASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 AL022069.1-201ENST00000568025 1636 ntBASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
TRIM49BA6NDI0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49BA6NDI0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 AL161729.1-201ENST00000604104 1402 ntBASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49BA6NDI0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 AC074183.2-201ENST00000623112 922 ntBASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49BA6NDI0 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.22■■□□□ 1.63
TRIM49BA6NDI0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49BA6NDI0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49BA6NDI0 AF131216.4-201ENST00000638924 1588 ntBASIC25.22■■□□□ 1.63
TRIM49BA6NDI0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM49BA6NDI0 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.63
TRIM49BA6NDI0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 MIR4281-201ENST00000580852 62 ntBASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.2■■□□□ 1.62
TRIM49BA6NDI0 ANOS2P-203ENST00000472227 1816 ntBASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.19■■□□□ 1.62
TRIM49BA6NDI0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 KRT18P24-201ENST00000344739 1156 ntBASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 THA1P-201ENST00000590384 1145 ntBASIC25.18■■□□□ 1.62
TRIM49BA6NDI0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.17■■□□□ 1.62
TRIM49BA6NDI0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.17■■□□□ 1.62
TRIM49BA6NDI0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.17■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms