Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 DPM3-202ENST00000368399 517 ntBASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTDP1Q9Y5B0 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
CTDP1Q9Y5B0 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CTDP1Q9Y5B0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CTDP1Q9Y5B0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CTDP1Q9Y5B0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
CTDP1Q9Y5B0 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 RN7SKP230-201ENST00000365642 335 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 SPTLC1P5-201ENST00000450718 252 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC104073.2-201ENST00000453737 312 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 UPF3AP2-201ENST00000457924 1132 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC008825.2-201ENST00000603374 718 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC022748.3-201ENST00000621828 275 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC100757.4-201ENST00000626934 759 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 AC006058.4-201ENST00000624016 1670 ntBASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTDP1Q9Y5B0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTDP1Q9Y5B0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms