Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 LRRC59-203ENST00000576448 1531 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 MIR770-201ENST00000390219 98 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 MYCLP2-201ENST00000449268 967 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CHCHD2P3-201ENST00000603038 451 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AC004233.3-201ENST00000607794 1269 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AC027601.5-201ENST00000624065 2482 ntBASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AC007969.1-201ENST00000433675 447 ntBASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 TSPY16P-201ENST00000449843 468 ntBASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 AC092364.2-202ENST00000597012 1073 ntBASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HIF3AQ9Y2N7 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms