Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC098614.1-201ENST00000368528 745 ntBASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AL162726.2-201ENST00000438986 1017 ntBASIC12.11□□□□□ -0.47
FOXA2Q9Y261 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 WASH4P-201ENST00000564273 1246 ntBASIC12.11□□□□□ -0.47
FOXA2Q9Y261 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC025048.6-201ENST00000634326 1161 ntBASIC12.11□□□□□ -0.47
FOXA2Q9Y261 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AGGF1P1-201ENST00000509500 2073 ntBASIC12.1□□□□□ -0.47
FOXA2Q9Y261 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AC011495.1-201ENST00000498085 584 ntBASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CTBP2P3-201ENST00000585629 1255 ntBASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 AL928921.2-201ENST00000641325 2442 ntBASIC12.1□□□□□ -0.47
FOXA2Q9Y261 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 C8orf49-201ENST00000525043 1968 ntBASIC12.1□□□□□ -0.47
FOXA2Q9Y261 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms