Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC020922.3-201ENST00000595064 547 ntBASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC092299.1-201ENST00000632679 757 ntBASIC16.69■□□□□ 0.26
COL20A1Q9P218 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC018629.1-201ENST00000623381 1736 ntBASIC16.69■□□□□ 0.26
COL20A1Q9P218 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
COL20A1Q9P218 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 KRT8P21-201ENST00000430398 1491 ntBASIC16.68■□□□□ 0.26
COL20A1Q9P218 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 AC116345.2-201ENST00000512837 523 ntBASIC16.68■□□□□ 0.26
COL20A1Q9P218 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.68■□□□□ 0.26
COL20A1Q9P218 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 NAP1L6-202ENST00000641404 1222 ntBASIC16.68■□□□□ 0.26
COL20A1Q9P218 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL20A1Q9P218 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL20A1Q9P218 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 MTHFR-210ENST00000641407 2387 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC015688.4-201ENST00000580780 1647 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 CICP14-201ENST00000629111 2732 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 XBP1P1-201ENST00000436573 652 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC003686.1-201ENST00000550956 1034 ntBASIC16.67■□□□□ 0.26
COL20A1Q9P218 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.67■□□□□ 0.26
COL20A1Q9P218 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL20A1Q9P218 AC009093.10-201ENST00000641956 1442 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms