Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PHBP15-201ENST00000574228 665 ntBASIC16.54■□□□□ 0.24
VTA1Q9NP79 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 AC103810.10-201ENST00000606504 343 ntBASIC16.54■□□□□ 0.24
VTA1Q9NP79 COX6A1P2-201ENST00000620597 330 ntBASIC16.54■□□□□ 0.24
VTA1Q9NP79 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 LINC01165-201ENST00000445190 1623 ntBASIC16.54■□□□□ 0.24
VTA1Q9NP79 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.54■□□□□ 0.24
VTA1Q9NP79 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.54■□□□□ 0.24
VTA1Q9NP79 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VTA1Q9NP79 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 RPL17P11-201ENST00000417593 544 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 RN7SL181P-201ENST00000462921 277 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 AC003686.1-201ENST00000550956 1034 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 MIR3677-201ENST00000578964 60 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.53■□□□□ 0.24
VTA1Q9NP79 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 ACE3P-201ENST00000423435 1973 ntBASIC16.53■□□□□ 0.24
VTA1Q9NP79 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VTA1Q9NP79 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 CAP2P1-201ENST00000557743 1390 ntBASIC16.52■□□□□ 0.24
VTA1Q9NP79 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 RPL8P2-201ENST00000430538 502 ntBASIC16.52■□□□□ 0.24
VTA1Q9NP79 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.52■□□□□ 0.24
VTA1Q9NP79 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.52■□□□□ 0.24
VTA1Q9NP79 AC007718.1-201ENST00000621078 280 ntBASIC16.52■□□□□ 0.24
VTA1Q9NP79 AL805961.1-201ENST00000642026 753 ntBASIC16.52■□□□□ 0.24
VTA1Q9NP79 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VTA1Q9NP79 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.52■□□□□ 0.23
VTA1Q9NP79 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms