Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 TPT1P11-201ENST00000458482 498 ntBASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 SERBP1P3-201ENST00000459980 809 ntBASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 HLA-V-204ENST00000476601 1289 ntBASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 SPCS2P1-201ENST00000561636 679 ntBASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 PPT1-213ENST00000641319 2388 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CYP4F24P-201ENST00000586049 1580 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 BCRP1-201ENST00000444246 691 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TEX28P1-201ENST00000613479 1221 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TEX28P2-201ENST00000617764 1221 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 COL6A4P2-202ENST00000504443 2753 ntBASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.4□□□□□ -0.1
PPP4R4Q6NUP7 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms