Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CDX1P47902 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 AC011477.6-201ENST00000604980 1927 ntBASIC12.31□□□□□ -0.44
CDX1P47902 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 AL731571.1-201ENST00000617058 5428 ntBASIC12.31□□□□□ -0.44
CDX1P47902 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 GNAQP1-201ENST00000444815 1067 ntBASIC12.31□□□□□ -0.44
CDX1P47902 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.31□□□□□ -0.44
CDX1P47902 AC055876.2-201ENST00000531834 546 ntBASIC12.31□□□□□ -0.44
CDX1P47902 API5-211ENST00000534695 560 ntTSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
CDX1P47902 RRP7BP-205ENST00000566851 833 ntBASIC12.31□□□□□ -0.44
CDX1P47902 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
CDX1P47902 AC099568.2-201ENST00000609194 695 ntBASIC12.31□□□□□ -0.44
CDX1P47902 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.31□□□□□ -0.44
CDX1P47902 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 AC090616.6-203ENST00000579186 1945 ntBASIC12.31□□□□□ -0.44
CDX1P47902 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 OS9-206ENST00000435406 2346 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 METTL26-204ENST00000397665 558 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.3□□□□□ -0.44
CDX1P47902 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.3□□□□□ -0.44
CDX1P47902 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.3□□□□□ -0.44
CDX1P47902 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.3□□□□□ -0.44
CDX1P47902 AC005225.4-201ENST00000557330 545 ntBASIC12.3□□□□□ -0.44
CDX1P47902 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.3□□□□□ -0.44
CDX1P47902 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
CDX1P47902 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.3□□□□□ -0.44
CDX1P47902 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CDX1P47902 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
CDX1P47902 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 AC063926.2-201ENST00000623766 1308 ntBASIC12.3□□□□□ -0.44
CDX1P47902 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms