Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
NKX2-1P43699 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.3□□□□□ -0.44
NKX2-1P43699 AL360270.3-201ENST00000609118 1348 ntBASIC12.3□□□□□ -0.44
NKX2-1P43699 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.3□□□□□ -0.44
NKX2-1P43699 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
NKX2-1P43699 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.3□□□□□ -0.44
NKX2-1P43699 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
NKX2-1P43699 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
NKX2-1P43699 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 AC015818.8-201ENST00000587907 1519 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 MEX3B-202ENST00000558133 4333 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.29□□□□□ -0.44
NKX2-1P43699 ADH5P3-201ENST00000433842 1137 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 FAM58CP-201ENST00000435741 640 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.29□□□□□ -0.44
NKX2-1P43699 KRT18P43-201ENST00000469825 1281 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 KRT8P48-201ENST00000515599 1220 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.29□□□□□ -0.44
NKX2-1P43699 BANF1P1-201ENST00000553684 263 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.29□□□□□ -0.44
NKX2-1P43699 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 NME4-212ENST00000621774 904 ntTSL 3 BASIC12.29□□□□□ -0.44
NKX2-1P43699 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 AC055717.3-201ENST00000622967 595 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 AC084121.4-201ENST00000641598 221 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 AC092865.6-201ENST00000642101 219 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 AF228730.8-201ENST00000642140 221 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 KRT8P12-202ENST00000472924 1397 ntBASIC12.29□□□□□ -0.44
NKX2-1P43699 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.29□□□□□ -0.44
NKX2-1P43699 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.29□□□□□ -0.44
NKX2-1P43699 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
NKX2-1P43699 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
NKX2-1P43699 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
NKX2-1P43699 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
NKX2-1P43699 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 AC027612.1-201ENST00000445234 2395 ntBASIC12.28□□□□□ -0.44
NKX2-1P43699 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
NKX2-1P43699 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.28□□□□□ -0.44
NKX2-1P43699 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
NKX2-1P43699 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.28□□□□□ -0.44
NKX2-1P43699 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.28□□□□□ -0.44
NKX2-1P43699 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
NKX2-1P43699 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms