Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CUX1P39880 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CUX1P39880 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
CUX1P39880 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CUX1P39880 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC24.15■■□□□ 1.46
CUX1P39880 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC24.15■■□□□ 1.46
CUX1P39880 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC24.15■■□□□ 1.46
CUX1P39880 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 SAT1-201ENST00000379251 801 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 SAT1-202ENST00000379253 909 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 SAT1-203ENST00000379254 868 ntTSL 3 BASIC24.15■■□□□ 1.46
CUX1P39880 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 OR52M2P-201ENST00000414298 959 ntBASIC24.15■■□□□ 1.46
CUX1P39880 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
CUX1P39880 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 AC006548.2-201ENST00000605217 529 ntBASIC24.15■■□□□ 1.46
CUX1P39880 AC018695.6-201ENST00000614011 534 ntBASIC24.15■■□□□ 1.46
CUX1P39880 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CUX1P39880 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC24.15■■□□□ 1.46
CUX1P39880 ZNF436-AS1-201ENST00000335648 2547 ntBASIC24.14■■□□□ 1.46
CUX1P39880 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC24.14■■□□□ 1.46
CUX1P39880 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
CUX1P39880 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC24.14■■□□□ 1.46
CUX1P39880 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CUX1P39880 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CUX1P39880 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CUX1P39880 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
CUX1P39880 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC24.14■■□□□ 1.45
CUX1P39880 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC24.14■■□□□ 1.45
CUX1P39880 BX679664.3-201ENST00000414070 555 ntBASIC24.14■■□□□ 1.45
CUX1P39880 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 AC113935.1-201ENST00000471722 555 ntBASIC24.14■■□□□ 1.45
CUX1P39880 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
CUX1P39880 RN7SL767P-201ENST00000493013 295 ntBASIC24.14■■□□□ 1.45
CUX1P39880 GDNF-207ENST00000515058 764 ntTSL 5 BASIC24.14■■□□□ 1.45
CUX1P39880 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
CUX1P39880 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
CUX1P39880 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC24.14■■□□□ 1.45
CUX1P39880 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC24.14■■□□□ 1.45
CUX1P39880 SNORD3B-1-201ENST00000577988 758 ntBASIC24.14■■□□□ 1.45
CUX1P39880 SKA2-205ENST00000580541 689 ntTSL 3 BASIC24.14■■□□□ 1.45
CUX1P39880 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC24.14■■□□□ 1.45
CUX1P39880 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
CUX1P39880 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CUX1P39880 AC091951.1-201ENST00000512854 2465 ntBASIC24.14■■□□□ 1.45
CUX1P39880 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC24.14■■□□□ 1.45
CUX1P39880 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 AIRN-201ENST00000601203 4374 ntBASIC24.13■■□□□ 1.45
CUX1P39880 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
CUX1P39880 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 AC117503.4-201ENST00000623229 1418 ntBASIC24.13■■□□□ 1.45
CUX1P39880 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC24.13■■□□□ 1.45
CUX1P39880 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
CUX1P39880 HINT1-205ENST00000508488 703 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 HPX-213ENST00000615166 826 ntTSL 5 BASIC24.13■■□□□ 1.45
CUX1P39880 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CUX1P39880 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC24.13■■□□□ 1.45
CUX1P39880 AC064801.2-201ENST00000625052 1303 ntBASIC24.13■■□□□ 1.45
CUX1P39880 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms