Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 SAMD11P1-201ENST00000571429 661 ntBASIC15.15■□□□□ 0.02
RPA3P35244 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.15■□□□□ 0.02
RPA3P35244 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RPA3P35244 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.15■□□□□ 0.02
RPA3P35244 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.15■□□□□ 0.02
RPA3P35244 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.15■□□□□ 0.02
RPA3P35244 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
RPA3P35244 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPA3P35244 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RPA3P35244 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RPA3P35244 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.14■□□□□ 0.01
RPA3P35244 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 AGGF1P1-201ENST00000509500 2073 ntBASIC15.14■□□□□ 0.01
RPA3P35244 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.14■□□□□ 0.01
RPA3P35244 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 GNAQP1-201ENST00000444815 1067 ntBASIC15.14■□□□□ 0.01
RPA3P35244 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 LINC02560-201ENST00000596379 459 ntBASIC15.14■□□□□ 0.01
RPA3P35244 AC092364.2-202ENST00000597012 1073 ntBASIC15.14■□□□□ 0.01
RPA3P35244 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RPA3P35244 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPA3P35244 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.14■□□□□ 0.01
RPA3P35244 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.14■□□□□ 0.01
RPA3P35244 AC012617.1-204ENST00000586340 2305 ntBASIC15.14■□□□□ 0.01
RPA3P35244 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
RPA3P35244 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 AC236430.1-201ENST00000402231 743 ntBASIC15.13■□□□□ 0.01
RPA3P35244 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.13■□□□□ 0.01
RPA3P35244 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.13■□□□□ 0.01
RPA3P35244 MEP1AP4-201ENST00000423244 1087 ntBASIC15.13■□□□□ 0.01
RPA3P35244 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.13■□□□□ 0.01
RPA3P35244 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.13■□□□□ 0.01
RPA3P35244 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.13■□□□□ 0.01
RPA3P35244 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.13■□□□□ 0.01
RPA3P35244 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RPA3P35244 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.13■□□□□ 0.01
RPA3P35244 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.13■□□□□ 0.01
RPA3P35244 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms