Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.71■□□□□ 0.27
CIITAP33076 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 AL157407.1-201ENST00000435784 904 ntBASIC16.71■□□□□ 0.27
CIITAP33076 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.71■□□□□ 0.27
CIITAP33076 AC004898.1-201ENST00000451057 766 ntBASIC16.71■□□□□ 0.27
CIITAP33076 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.71■□□□□ 0.27
CIITAP33076 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.71■□□□□ 0.27
CIITAP33076 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 AC100827.2-201ENST00000563214 1194 ntBASIC16.71■□□□□ 0.27
CIITAP33076 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.71■□□□□ 0.27
CIITAP33076 BNIP3P13-201ENST00000599968 566 ntBASIC16.71■□□□□ 0.27
CIITAP33076 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.71■□□□□ 0.27
CIITAP33076 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CIITAP33076 Z98259.2-201ENST00000641583 609 ntBASIC16.71■□□□□ 0.27
CIITAP33076 KRT8P28-201ENST00000433288 1390 ntBASIC16.71■□□□□ 0.27
CIITAP33076 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 TSPY26P-202ENST00000565928 3884 ntBASIC16.71■□□□□ 0.27
CIITAP33076 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.71■□□□□ 0.27
CIITAP33076 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.71■□□□□ 0.26
CIITAP33076 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
CIITAP33076 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.26
CIITAP33076 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CIITAP33076 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
CIITAP33076 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 AL390755.1-201ENST00000623716 2027 ntBASIC16.7■□□□□ 0.26
CIITAP33076 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 AL645933.1-201ENST00000440087 609 ntBASIC16.7■□□□□ 0.26
CIITAP33076 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 ZNF767P-206ENST00000513792 565 ntBASIC16.7■□□□□ 0.26
CIITAP33076 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.7■□□□□ 0.26
CIITAP33076 AC126915.1-201ENST00000522847 1038 ntBASIC16.7■□□□□ 0.26
CIITAP33076 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.7■□□□□ 0.26
CIITAP33076 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.7■□□□□ 0.26
CIITAP33076 AL118558.3-201ENST00000607414 1079 ntBASIC16.7■□□□□ 0.26
CIITAP33076 AC007663.3-201ENST00000609632 465 ntBASIC16.7■□□□□ 0.26
CIITAP33076 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CIITAP33076 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
CIITAP33076 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CIITAP33076 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms