Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.45■□□□□ 0.7
HOXC9P31274 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
HOXC9P31274 AC025262.2-201ENST00000623975 1056 ntBASIC19.45■□□□□ 0.7
HOXC9P31274 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 AC013268.4-201ENST00000637413 2228 ntBASIC19.45■□□□□ 0.7
HOXC9P31274 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXC9P31274 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HOXC9P31274 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXC9P31274 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXC9P31274 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXC9P31274 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 CHCHD2P9-201ENST00000461726 456 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 RPL18AP3-201ENST00000462885 528 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 RN7SL530P-201ENST00000485097 298 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 AP001065.2-201ENST00000617205 644 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 LINC00528-201ENST00000600723 2160 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC9P31274 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
HOXC9P31274 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC9P31274 AGAP7P-201ENST00000582299 2062 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 AGAP14-201ENST00000624701 2060 ntBASIC19.44■□□□□ 0.7
HOXC9P31274 AC015688.4-201ENST00000580780 1647 ntBASIC19.43■□□□□ 0.7
HOXC9P31274 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC19.43■□□□□ 0.7
HOXC9P31274 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.43■□□□□ 0.7
HOXC9P31274 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HOXC9P31274 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC9P31274 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
HOXC9P31274 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC9P31274 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC9P31274 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HOXC9P31274 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms