Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 AL645937.2-201ENST00000396808 931 ntBASIC13.03□□□□□ -0.32
COL8A1P27658 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 HIST2H2BA-201ENST00000412169 381 ntBASIC13.03□□□□□ -0.32
COL8A1P27658 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 KRT17P4-201ENST00000429445 819 ntBASIC13.03□□□□□ -0.32
COL8A1P27658 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 LYPLA2P1-203ENST00000447689 696 ntBASIC13.03□□□□□ -0.32
COL8A1P27658 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 AC084752.1-201ENST00000509766 622 ntBASIC13.03□□□□□ -0.32
COL8A1P27658 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.03□□□□□ -0.32
COL8A1P27658 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC13.03□□□□□ -0.32
COL8A1P27658 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.03□□□□□ -0.32
COL8A1P27658 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL8A1P27658 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL8A1P27658 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
COL8A1P27658 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC13.02□□□□□ -0.32
COL8A1P27658 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
COL8A1P27658 LINC00554-201ENST00000564841 3011 ntBASIC13.02□□□□□ -0.32
COL8A1P27658 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.02□□□□□ -0.32
COL8A1P27658 AL513477.1-201ENST00000602865 2407 ntBASIC13.02□□□□□ -0.32
COL8A1P27658 AC015909.3-201ENST00000572855 1794 ntBASIC13.02□□□□□ -0.32
COL8A1P27658 AC097376.2-205ENST00000610159 5334 ntBASIC13.02□□□□□ -0.32
COL8A1P27658 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
COL8A1P27658 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
COL8A1P27658 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.02□□□□□ -0.32
COL8A1P27658 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL8A1P27658 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.02□□□□□ -0.33
COL8A1P27658 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.02□□□□□ -0.33
COL8A1P27658 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC13.02□□□□□ -0.33
COL8A1P27658 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.02□□□□□ -0.33
COL8A1P27658 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 AP000358.1-201ENST00000456260 156 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.02□□□□□ -0.33
COL8A1P27658 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
COL8A1P27658 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC13.02□□□□□ -0.33
COL8A1P27658 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.02□□□□□ -0.33
COL8A1P27658 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 AC005962.1-201ENST00000584100 773 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
COL8A1P27658 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.02□□□□□ -0.33
COL8A1P27658 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
COL8A1P27658 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.02□□□□□ -0.33
COL8A1P27658 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 MRPL37P1-201ENST00000592451 1337 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 AL008718.2-201ENST00000609206 1313 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms