Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC18.14■□□□□ 0.5
COL5A3P25940 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
COL5A3P25940 AGAP7P-201ENST00000582299 2062 ntBASIC18.14■□□□□ 0.5
COL5A3P25940 AGAP14-201ENST00000624701 2060 ntBASIC18.14■□□□□ 0.5
COL5A3P25940 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.14■□□□□ 0.49
COL5A3P25940 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL5A3P25940 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL5A3P25940 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL5A3P25940 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 SAT1-201ENST00000379251 801 ntTSL 2 BASIC18.14■□□□□ 0.49
COL5A3P25940 SAT1-202ENST00000379253 909 ntTSL 2 BASIC18.14■□□□□ 0.49
COL5A3P25940 SAT1-203ENST00000379254 868 ntTSL 3 BASIC18.14■□□□□ 0.49
COL5A3P25940 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.14■□□□□ 0.49
COL5A3P25940 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL5A3P25940 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
COL5A3P25940 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.14■□□□□ 0.49
COL5A3P25940 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A3P25940 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL5A3P25940 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 PIFO-201ENST00000369737 746 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
COL5A3P25940 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.13■□□□□ 0.49
COL5A3P25940 AC145285.5-201ENST00000562217 361 ntBASIC18.13■□□□□ 0.49
COL5A3P25940 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC18.13■□□□□ 0.49
COL5A3P25940 CYP4F36P-201ENST00000589193 186 ntBASIC18.13■□□□□ 0.49
COL5A3P25940 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 AL139339.2-201ENST00000608063 657 ntBASIC18.13■□□□□ 0.49
COL5A3P25940 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL5A3P25940 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.13■□□□□ 0.49
COL5A3P25940 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 AMT-256ENST00000638063 1783 ntTSL 5 BASIC18.13■□□□□ 0.49
COL5A3P25940 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
COL5A3P25940 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A3P25940 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL5A3P25940 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 MIR1301-201ENST00000408518 82 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 AC073210.1-201ENST00000414799 232 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 AL512599.1-201ENST00000430724 685 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 BPIFB5P-201ENST00000457066 1099 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A3P25940 AC091769.1-201ENST00000619576 568 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 PDXDC2P-206ENST00000534700 1315 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
COL5A3P25940 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 AL365181.1-201ENST00000564032 1828 ntBASIC18.12■□□□□ 0.49
COL5A3P25940 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
COL5A3P25940 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
COL5A3P25940 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A3P25940 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL5A3P25940 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms