Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL6A3P12111 MIR1249-201ENST00000408671 66 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AP000281.2-201ENST00000427911 384 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A3P12111 GOLGA2P8-201ENST00000505201 779 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 RN7SL556P-201ENST00000582856 298 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AC126755.5-201ENST00000622756 267 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 GOSR2-231ENST00000640007 1425 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 LINC01101-201ENST00000622953 1884 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A3P12111 AC069421.1-201ENST00000447462 323 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A3P12111 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL6A3P12111 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 MIR7848-201ENST00000617402 101 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AC091769.1-201ENST00000619576 568 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 AC048382.6-201ENST00000621980 1223 ntBASIC14.96□□□□□ -0.01
COL6A3P12111 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.96□□□□□ -0.02
COL6A3P12111 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.96□□□□□ -0.02
COL6A3P12111 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.96□□□□□ -0.02
COL6A3P12111 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.96□□□□□ -0.02
COL6A3P12111 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A3P12111 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 CCDC153-202ENST00000415318 1173 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 AC092903.1-201ENST00000466506 262 ntBASIC14.95□□□□□ -0.02
COL6A3P12111 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.95□□□□□ -0.02
COL6A3P12111 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC14.95□□□□□ -0.02
COL6A3P12111 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 AC103563.1-201ENST00000429316 123 ntBASIC14.95□□□□□ -0.02
COL6A3P12111 KRT18P62-201ENST00000446618 1287 ntBASIC14.95□□□□□ -0.02
COL6A3P12111 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL6A3P12111 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 FAM213AP2-201ENST00000521579 683 ntBASIC14.95□□□□□ -0.02
COL6A3P12111 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 NEMF-210ENST00000556672 590 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A3P12111 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
COL6A3P12111 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A3P12111 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms