Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 LINC00552-201ENST00000625151 2579 ntBASIC14.06□□□□□ -0.16
LDB3O75112 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.06□□□□□ -0.16
LDB3O75112 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.06□□□□□ -0.16
LDB3O75112 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 RN7SKP230-201ENST00000365642 335 ntBASIC14.06□□□□□ -0.16
LDB3O75112 GK-202ENST00000378941 458 ntTSL 3 BASIC14.06□□□□□ -0.16
LDB3O75112 MIR658-201ENST00000385210 100 ntBASIC14.06□□□□□ -0.16
LDB3O75112 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LDB3O75112 AL138725.1-201ENST00000407347 1314 ntBASIC14.06□□□□□ -0.16
LDB3O75112 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LDB3O75112 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LDB3O75112 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LDB3O75112 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LDB3O75112 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 AC009093.2-202ENST00000620513 2079 ntBASIC14.05□□□□□ -0.16
LDB3O75112 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.05□□□□□ -0.16
LDB3O75112 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 CD8B2-202ENST00000417670 633 ntBASIC14.05□□□□□ -0.16
LDB3O75112 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 ATP5G2P4-201ENST00000442175 420 ntBASIC14.05□□□□□ -0.16
LDB3O75112 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 AC119751.2-201ENST00000504529 210 ntBASIC14.05□□□□□ -0.16
LDB3O75112 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.05□□□□□ -0.16
LDB3O75112 AP003171.2-201ENST00000528208 925 ntBASIC14.05□□□□□ -0.16
LDB3O75112 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.05□□□□□ -0.16
LDB3O75112 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.05□□□□□ -0.16
LDB3O75112 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.05□□□□□ -0.16
LDB3O75112 MIR4259-201ENST00000584466 101 ntBASIC14.05□□□□□ -0.16
LDB3O75112 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.05□□□□□ -0.16
LDB3O75112 AC138696.2-201ENST00000607376 223 ntBASIC14.05□□□□□ -0.16
LDB3O75112 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 AHCYP2-201ENST00000430630 1300 ntBASIC14.05□□□□□ -0.16
LDB3O75112 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LDB3O75112 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms