Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP2AO43633 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP2AO43633 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 AL136309.1-201ENST00000403917 691 ntBASIC16.79■□□□□ 0.28
CHMP2AO43633 ACTBP11-201ENST00000436287 1126 ntBASIC16.79■□□□□ 0.28
CHMP2AO43633 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 GOLGA2P4-201ENST00000441462 777 ntBASIC16.79■□□□□ 0.28
CHMP2AO43633 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.79■□□□□ 0.28
CHMP2AO43633 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.79■□□□□ 0.28
CHMP2AO43633 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 LINC01101-201ENST00000622953 1884 ntBASIC16.79■□□□□ 0.28
CHMP2AO43633 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
CHMP2AO43633 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP2AO43633 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP2AO43633 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.78■□□□□ 0.28
CHMP2AO43633 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.78■□□□□ 0.28
CHMP2AO43633 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 RPSAP36-202ENST00000494591 1261 ntBASIC16.78■□□□□ 0.28
CHMP2AO43633 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP2AO43633 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.78■□□□□ 0.28
CHMP2AO43633 MIR6799-201ENST00000620297 69 ntBASIC16.78■□□□□ 0.28
CHMP2AO43633 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.78■□□□□ 0.28
CHMP2AO43633 AP001002.3-201ENST00000623482 206 ntBASIC16.78■□□□□ 0.28
CHMP2AO43633 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CHMP2AO43633 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP2AO43633 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC013726.1-201ENST00000563747 2285 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 AC015818.8-201ENST00000587907 1519 ntBASIC16.77■□□□□ 0.28
CHMP2AO43633 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CHMP2AO43633 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP2AO43633 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CHMP2AO43633 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms