Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.78□□□□□ -0.36
SDCBPO00560 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SDCBPO00560 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.78□□□□□ -0.36
SDCBPO00560 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.78□□□□□ -0.36
SDCBPO00560 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.78□□□□□ -0.36
SDCBPO00560 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.78□□□□□ -0.36
SDCBPO00560 AL512638.1-201ENST00000457493 794 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.78□□□□□ -0.36
SDCBPO00560 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 ZNF890P-202ENST00000530367 1156 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
SDCBPO00560 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 AC106028.4-201ENST00000614509 607 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 AC004461.2-201ENST00000629517 803 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 AL645728.2-202ENST00000641679 227 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SDCBPO00560 AC055811.4-201ENST00000624039 1754 ntBASIC12.78□□□□□ -0.36
SDCBPO00560 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SDCBPO00560 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
SDCBPO00560 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
SDCBPO00560 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SDCBPO00560 AC011474.4-201ENST00000623523 2076 ntBASIC12.77□□□□□ -0.36
SDCBPO00560 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.77□□□□□ -0.36
SDCBPO00560 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
SDCBPO00560 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.77□□□□□ -0.36
SDCBPO00560 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.77□□□□□ -0.36
SDCBPO00560 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.77□□□□□ -0.36
SDCBPO00560 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SDCBPO00560 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.77□□□□□ -0.37
SDCBPO00560 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.77□□□□□ -0.37
SDCBPO00560 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
SDCBPO00560 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SDCBPO00560 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.77□□□□□ -0.37
SDCBPO00560 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.77□□□□□ -0.37
SDCBPO00560 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.77□□□□□ -0.37
SDCBPO00560 AC093512.1-201ENST00000617969 520 ntBASIC12.77□□□□□ -0.37
SDCBPO00560 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SDCBPO00560 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.77□□□□□ -0.37
SDCBPO00560 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms