Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 LINC01230-201ENST00000625222 3017 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AC041040.2-201ENST00000622926 2899 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 CALY-203ENST00000368558 825 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AP006294.1-201ENST00000415407 339 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AC098850.1-201ENST00000419919 790 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 NUS1P3-201ENST00000423502 862 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ELK1P1-201ENST00000485699 580 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AL138799.1-201ENST00000448213 1675 ntBASIC12.12□□□□□ -0.47
FOXA2Q9Y261 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA2Q9Y261 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 AC117489.1-201ENST00000625169 3217 ntBASIC12.11□□□□□ -0.47
FOXA2Q9Y261 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.11□□□□□ -0.47
FOXA2Q9Y261 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms