Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 AC007191.1-201ENST00000623179 2995 ntBASIC14.59□□□□□ -0.07
VPS4AQ9UN37 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS4AQ9UN37 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS4AQ9UN37 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 RPL13P2-201ENST00000440687 659 ntBASIC14.58□□□□□ -0.08
VPS4AQ9UN37 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 AC074044.1-201ENST00000609673 707 ntBASIC14.58□□□□□ -0.08
VPS4AQ9UN37 AL022328.1-201ENST00000610050 478 ntBASIC14.58□□□□□ -0.08
VPS4AQ9UN37 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 AC005089.1-201ENST00000619486 2241 ntBASIC14.58□□□□□ -0.08
VPS4AQ9UN37 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS4AQ9UN37 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 PDIA3P1-201ENST00000471856 1510 ntBASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 RNA5SP412-201ENST00000516234 123 ntBASIC14.57□□□□□ -0.08
VPS4AQ9UN37 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS4AQ9UN37 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms