Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 AL133466.1-201ENST00000447582 150 ntBASIC16.71■□□□□ 0.27
COL20A1Q9P218 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 RBM8B-201ENST00000555532 525 ntBASIC16.71■□□□□ 0.27
COL20A1Q9P218 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 AC016629.1-201ENST00000596579 586 ntBASIC16.71■□□□□ 0.27
COL20A1Q9P218 AC079336.7-201ENST00000623428 1078 ntBASIC16.71■□□□□ 0.27
COL20A1Q9P218 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.71■□□□□ 0.26
COL20A1Q9P218 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL20A1Q9P218 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL20A1Q9P218 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL20A1Q9P218 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL20A1Q9P218 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL20A1Q9P218 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
COL20A1Q9P218 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 KHSRPP1-201ENST00000427983 1768 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC073150.1-201ENST00000450406 1084 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC134698.3-201ENST00000523880 214 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC079328.1-201ENST00000560358 952 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MEG3_2.1-201ENST00000611456 105 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC133540.1-201ENST00000620845 1019 ntBASIC16.7■□□□□ 0.26
COL20A1Q9P218 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.7■□□□□ 0.26
COL20A1Q9P218 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL20A1Q9P218 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 AC046158.3-201ENST00000624947 2558 ntBASIC16.69■□□□□ 0.26
COL20A1Q9P218 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL20A1Q9P218 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms