Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 MIR6074-201ENST00000612054 107 ntBASIC15.95■□□□□ 0.14
SIX2Q9NPC8 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.95■□□□□ 0.14
SIX2Q9NPC8 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 TPM3P8-201ENST00000330554 643 ntBASIC15.94■□□□□ 0.14
SIX2Q9NPC8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 FAM197Y7-201ENST00000432892 766 ntBASIC15.94■□□□□ 0.14
SIX2Q9NPC8 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 FTH1P14-201ENST00000482930 551 ntBASIC15.94■□□□□ 0.14
SIX2Q9NPC8 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
SIX2Q9NPC8 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC004945.1-201ENST00000416738 983 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 PUDPP3-201ENST00000445368 636 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 RNA5SP486-201ENST00000515961 83 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 MIR4683-201ENST00000579659 81 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC015936.2-201ENST00000593177 259 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC233724.13-201ENST00000598383 410 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 AC011474.4-201ENST00000623523 2076 ntBASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SIX2Q9NPC8 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms