Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.96□□□□□ -0.02
TM9SF3Q9HD45 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 RN7SL769P-201ENST00000469386 295 ntBASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 AC005740.2-201ENST00000511085 419 ntBASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 AP001505.2-201ENST00000616815 443 ntBASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CU633904.3-201ENST00000624042 1029 ntBASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TM9SF3Q9HD45 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 C18orf15-201ENST00000623680 2534 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC007326.2-201ENST00000624224 7579 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC026434.2-201ENST00000506094 1078 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC245884.6-201ENST00000515672 1067 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC097724.1-201ENST00000609581 426 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AL023803.2-201ENST00000620080 638 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC091812.3-201ENST00000621362 345 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 AC022748.3-201ENST00000621828 275 ntBASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TM9SF3Q9HD45 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms