Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AL133267.1-201ENST00000398220 340 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AC023141.5-201ENST00000458585 616 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AC093520.2-201ENST00000561830 333 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 LINC00628-201ENST00000628516 1289 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 GPS2P2-201ENST00000430745 888 ntBASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.97□□□□□ -0.33
CHMP1AQ9HD42 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms