Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AC010141.1-201ENST00000411585 623 ntBASIC17.56■□□□□ 0.4
RNF41Q9H4P4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AP001002.3-201ENST00000623482 206 ntBASIC17.56■□□□□ 0.4
RNF41Q9H4P4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.56■□□□□ 0.4
RNF41Q9H4P4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 SHC1P1-201ENST00000425230 1745 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 MTX1P1-201ENST00000440904 838 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 RPL13AP20-201ENST00000459725 609 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 FAM86HP-204ENST00000513466 959 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AL033527.4-201ENST00000641026 673 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 MTHFR-210ENST00000641407 2387 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 CICP24-201ENST00000605464 2705 ntBASIC17.55■□□□□ 0.4
RNF41Q9H4P4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RNF41Q9H4P4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 AC100850.1-201ENST00000506768 649 ntBASIC17.54■□□□□ 0.4
RNF41Q9H4P4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF41Q9H4P4 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms