Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC098657.1-201ENST00000416270 1135 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 SCARNA12-201ENST00000459155 270 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 RARS-210ENST00000626454 177 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VPS13AQ96RL7 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.33□□□□□ -0.11
VPS13AQ96RL7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.33□□□□□ -0.11
VPS13AQ96RL7 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
VPS13AQ96RL7 AC138761.6-201ENST00000583997 1423 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MIR645-201ENST00000385283 94 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 KRT8P30-201ENST00000432100 650 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 CDCA4P4-201ENST00000435216 680 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 RN7SL300P-201ENST00000582522 318 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 NEK4P3-201ENST00000604859 544 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 PPP1R2P4-201ENST00000424051 595 ntBASIC14.33□□□□□ -0.12
VPS13AQ96RL7 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
VPS13AQ96RL7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 DKKL1P1-201ENST00000400550 698 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 BX322534.1-201ENST00000635574 241 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC215524.1-201ENST00000635696 241 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC005865.2-202ENST00000635814 725 ntBASIC14.32□□□□□ -0.12
VPS13AQ96RL7 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13AQ96RL7 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms