Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
USP47Q96K76 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.71■□□□□ 0.91
USP47Q96K76 PFN1P12-201ENST00000455938 534 ntBASIC20.71■□□□□ 0.91
USP47Q96K76 ATP6V0CP2-201ENST00000469409 207 ntBASIC20.71■□□□□ 0.91
USP47Q96K76 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 AC100827.2-201ENST00000563214 1194 ntBASIC20.71■□□□□ 0.91
USP47Q96K76 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.71■□□□□ 0.91
USP47Q96K76 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
USP47Q96K76 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
USP47Q96K76 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 AL008718.2-201ENST00000609206 1313 ntBASIC20.7■□□□□ 0.9
USP47Q96K76 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC20.7■□□□□ 0.9
USP47Q96K76 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 TMBIM7P-202ENST00000641474 1516 ntBASIC20.7■□□□□ 0.9
USP47Q96K76 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
USP47Q96K76 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
USP47Q96K76 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.7■□□□□ 0.9
USP47Q96K76 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.7■□□□□ 0.9
USP47Q96K76 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
USP47Q96K76 RPL35-206ENST00000629845 340 ntTSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.7■□□□□ 0.9
USP47Q96K76 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.7■□□□□ 0.9
USP47Q96K76 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP47Q96K76 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USP47Q96K76 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC20.69■□□□□ 0.9
USP47Q96K76 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 AC009093.10-201ENST00000641956 1442 ntBASIC20.69■□□□□ 0.9
USP47Q96K76 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC20.69■□□□□ 0.9
USP47Q96K76 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP47Q96K76 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
USP47Q96K76 AC006033.1-201ENST00000440505 426 ntBASIC20.69■□□□□ 0.9
USP47Q96K76 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 AL035414.1-201ENST00000451327 857 ntBASIC20.69■□□□□ 0.9
USP47Q96K76 RNMTL1P1-201ENST00000454103 560 ntBASIC20.69■□□□□ 0.9
USP47Q96K76 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC20.69■□□□□ 0.9
USP47Q96K76 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.69■□□□□ 0.9
USP47Q96K76 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP47Q96K76 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC20.69■□□□□ 0.9
USP47Q96K76 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP47Q96K76 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms