Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP4Q8N3C7 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AL157414.3-201ENST00000624276 1954 ntBASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 GAPDHP40-201ENST00000505218 1006 ntBASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 BX640514.1-201ENST00000583223 1918 ntBASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP4Q8N3C7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 LILRP1-201ENST00000444199 1370 ntBASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 MRPS18AP1-201ENST00000414458 589 ntBASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 AC104794.3-201ENST00000566840 1248 ntBASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP4Q8N3C7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 402.4 ms