Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.34■□□□□ 0.37
SSRP1Q08945 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SSRP1Q08945 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SSRP1Q08945 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSRP1Q08945 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSRP1Q08945 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
SSRP1Q08945 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSRP1Q08945 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSRP1Q08945 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.33■□□□□ 0.37
SSRP1Q08945 AC020910.5-201ENST00000623668 1865 ntBASIC17.33■□□□□ 0.37
SSRP1Q08945 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.33■□□□□ 0.37
SSRP1Q08945 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SSRP1Q08945 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.33■□□□□ 0.37
SSRP1Q08945 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SSRP1Q08945 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.33■□□□□ 0.36
SSRP1Q08945 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 FAM197Y7-201ENST00000432892 766 ntBASIC17.33■□□□□ 0.36
SSRP1Q08945 AL590640.2-201ENST00000457038 527 ntBASIC17.33■□□□□ 0.36
SSRP1Q08945 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
SSRP1Q08945 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SSRP1Q08945 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSRP1Q08945 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
SSRP1Q08945 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.33■□□□□ 0.36
SSRP1Q08945 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 AL136172.1-201ENST00000598590 1394 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 KRT43P-201ENST00000434019 910 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AL391280.1-201ENST00000506969 1062 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 AC131206.1-201ENST00000538078 1211 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.32■□□□□ 0.36
SSRP1Q08945 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.32■□□□□ 0.36
SSRP1Q08945 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AC097359.2-201ENST00000604992 2389 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SSRP1Q08945 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AL009178.2-201ENST00000597278 2719 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.32■□□□□ 0.36
SSRP1Q08945 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSRP1Q08945 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SSRP1Q08945 AP001267.2-201ENST00000532619 2086 ntBASIC17.32■□□□□ 0.36
SSRP1Q08945 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSRP1Q08945 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSRP1Q08945 AC007191.1-201ENST00000623179 2995 ntBASIC17.31■□□□□ 0.36
SSRP1Q08945 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.31■□□□□ 0.36
SSRP1Q08945 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SSRP1Q08945 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSRP1Q08945 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSRP1Q08945 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms