Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RTN3P1-201ENST00000536295 711 ntBASIC12.15□□□□□ -0.46
LMO4P61968 AC242376.1-201ENST00000559033 726 ntBASIC12.15□□□□□ -0.46
LMO4P61968 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.15□□□□□ -0.46
LMO4P61968 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.15□□□□□ -0.46
LMO4P61968 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.15□□□□□ -0.46
LMO4P61968 AC006453.1-201ENST00000636037 1257 ntBASIC12.15□□□□□ -0.46
LMO4P61968 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
LMO4P61968 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 KRT8P28-201ENST00000433288 1390 ntBASIC12.15□□□□□ -0.46
LMO4P61968 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.47
LMO4P61968 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
LMO4P61968 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
LMO4P61968 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.15□□□□□ -0.47
LMO4P61968 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.15□□□□□ -0.47
LMO4P61968 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.15□□□□□ -0.47
LMO4P61968 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
LMO4P61968 AC139712.1-201ENST00000378256 1875 ntBASIC12.14□□□□□ -0.47
LMO4P61968 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
LMO4P61968 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 HINT2P1-201ENST00000419438 481 ntBASIC12.14□□□□□ -0.47
LMO4P61968 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.14□□□□□ -0.47
LMO4P61968 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 MIR4754-201ENST00000582477 89 ntBASIC12.14□□□□□ -0.47
LMO4P61968 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.14□□□□□ -0.47
LMO4P61968 AC012044.1-201ENST00000603431 297 ntBASIC12.14□□□□□ -0.47
LMO4P61968 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 AL353726.2-201ENST00000623259 884 ntBASIC12.14□□□□□ -0.47
LMO4P61968 AC128714.1-201ENST00000637035 887 ntBASIC12.14□□□□□ -0.47
LMO4P61968 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LMO4P61968 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.14□□□□□ -0.47
LMO4P61968 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.14□□□□□ -0.47
LMO4P61968 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LMO4P61968 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms