Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA1P49639 AC015818.8-201ENST00000587907 1519 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 AC084364.1-201ENST00000551967 1556 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 STRCP1-201ENST00000509801 5328 ntBASIC12.51□□□□□ -0.41
HOXA1P49639 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 ADH5P3-201ENST00000433842 1137 ntBASIC12.51□□□□□ -0.41
HOXA1P49639 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.51□□□□□ -0.41
HOXA1P49639 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 PIN1-206ENST00000587625 878 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC12.51□□□□□ -0.41
HOXA1P49639 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
HOXA1P49639 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA1P49639 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXA1P49639 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA1P49639 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA1P49639 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HOXA1P49639 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 AC092053.3-201ENST00000641308 4975 ntBASIC12.5□□□□□ -0.41
HOXA1P49639 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 HSPB7-201ENST00000311890 2892 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.5□□□□□ -0.41
HOXA1P49639 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HOXA1P49639 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 AL592309.1-201ENST00000443127 649 ntBASIC12.5□□□□□ -0.41
HOXA1P49639 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.5□□□□□ -0.41
HOXA1P49639 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXA1P49639 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXA1P49639 SLC25A1P1-201ENST00000528351 927 ntBASIC12.5□□□□□ -0.41
HOXA1P49639 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXA1P49639 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXA1P49639 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 AC055717.3-201ENST00000622967 595 ntBASIC12.5□□□□□ -0.41
HOXA1P49639 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms